Overview

IDAllelesLocationGenome BuildSource
rs17810546A/Gchr3: 15994726238dbsnp146
rs17810546A/G chr3: 159665050 37dbsnp146_grch37
imm_3_161147744A/G chr3: 159947262 38ImmunoChip
imm_3_161147744A/G chr3: 159665050 37ImmunoChip
imm_3_161147744A/G chr3: 161147744 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs59217415rs17810546rs17810546130

Criteria

rs17810546 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is GW-Significant in a Study 
Marker is in r2>0.8 with an index SNP 
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs17810546 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  IL12A-AS1 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs17810546, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.