Overview

IDAllelesLocationGenome BuildSource
rs34593439G/A,Cchr15: 7894261538dbsnp146
rs34593439G/A,C chr15: 79234957 37dbsnp146_grch37
imm_15_77022012A/G chr15: 78942615 38ImmunoChip
imm_15_77022012A/G chr15: 79234957 37ImmunoChip
imm_15_77022012A/G chr15: 77022012 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build

Criteria

rs34593439 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is GW-Significant in a Study 
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs34593439 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  CTSH 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs34593439, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.