Overview

IDAllelesLocationGenome BuildSource
rs7423615C/Tchr2: 23025215938dbsnp146
rs7423615C/T chr2: 231116874 37dbsnp146_grch37
imm_2_230825118A/G chr2: 230252159 38ImmunoChip
imm_2_230825118A/G chr2: 231116874 37ImmunoChip
imm_2_230825118A/G chr2: 230825118 36ImmunoChip

Jbrowse

Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs17330091rs7423615rs7423615123
rs56416427rs7423615rs7423615130

Criteria

rs7423615 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is GW-Significant in a Study 
Marker is in r2>0.8 with an index SNP 
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs7423615 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  SP140 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs7423615, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.