Data
Location
Version/Date
Cytobands
ftp://hgdownload.cse.ucsc.edu/goldenPath//hg38/database/cytoBand.txt.gz
hg38
Chromosome Information
ftp://hgdownload.cse.ucsc.edu/goldenPath//hg38/database/chromInfo.txt.gz
hg38
Gene History
ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/gene_history.gz
31-03-16
Genes
ftp://ftp.ensembl.org/pub//release-84/gtf/homo_sapiens/Homo_sapiens.GRCh38.84.gtf.gz
hg38 Release 84
Ensembl Attributes
http://ensembl.org/biomart/martservice
31-03-16
Gene Homologs
http://ensembl.org/biomart/martservice
31-03-16
Gene to Ensembl
ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2ensembl.gz
31-03-16
Gene Information
ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/gene_info.gz
31-03-16
Gene PubMed
ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2pubmed.gz
31-03-16
Ensembl to MGI
ftp://ftp.informatics.jax.org//pub/reports/MRK_ENSEMBL.rpt
31-03-16
IntAct
ftp://ftp.ebi.ac.uk/pub/databases/intact/current//psimitab/intact.zip
31-03-16
MSigDB
http://software.broadinstitute.org/gsea/msigdb/download_file.jsp?filePath=/resources/msigdb/5.0//c2.cp.kegg.v5.0.entrez.gmt, c2.cp.reactome.v5.0.entrez.gmt, c2.cp.biocarta.v5.0.entrez.gmt, c5.all.v5.0.entrez.gmt
31-03-16
BioPlex
http://wren.hms.harvard.edu/bioplex/data//BioPlex_interactionList_v4.tsv
31-03-16
DBSNP
ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b146_GRCh38p2/VCF/All_20151104.vcf.gz
146
rs merge
ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b146_GRCh38p2/database/organism_data/RsMergeArch.bcp.gz
146