Association Statistics from Genome-Wide Association Studies (GWAS)

All data was supplied to us from the corresponding author and research group. Data was received post QC (please refer to the publication for those QC steps). Any data marked as excluded in the provided dataset has been removed from the files below. Furthermore we applied a global cutoff of MAF<99% for all datasets as determined in the 1000 Genomes Utah Residents with Northern and Western European ancestry (CEU) population.

All data shown below is available under the terms of our Data Access Agreement and you must be logged in to view and download these files.

Summary statistics for ImmunoChip focussed studies are available here

Publication Disease(s) Curated Study Tab Files GZipped Tab Files Notes
Dubois G (Nat Genet 2010)
CEL
GDXHsS00038 hg18.tab hg19.tab hg38.tab hg18.tab.gz hg19.tab.gz hg38.tab.gz  
Franke A (Nat Genet 2010)
CRO
GDXHsS00011 hg18.tab hg19.tab hg38.tab hg18.tab.gz hg19.tab.gz hg38.tab.gz  
International Multiple Sclerosis Genetics Consortium (IMSGC) (Nature 2011)
MS
GDXHsS00007 hg18.tab hg19.tab hg38.tab hg18.tab.gz hg19.tab.gz hg38.tab.gz  
Cordell HJ (Nat Commun 2015)
PBC
GDXHsS00048 hg18.tab hg19.tab hg38.tab hg18.tab.gz hg19.tab.gz hg38.tab.gz  
Stahl EA (Nat Genet 2010)
RA
GDXHsS00014 hg18.tab hg19.tab hg38.tab hg18.tab.gz hg19.tab.gz hg38.tab.gz  
Okada Y (Nature 2014)
RA
GDXHsS00035 hg18.tab hg19.tab hg38.tab hg18.tab.gz hg19.tab.gz hg38.tab.gz  
Bentham J (Nat Genet 2015)
SLE
GDXHsS00047 hg18.tab hg19.tab hg38.tab hg18.tab.gz hg19.tab.gz hg38.tab.gz  
Barrett JC (Nat Genet 2009)
T1D
GDxHsS00004 hg18.tab hg19.tab hg38.tab hg18.tab.gz hg19.tab.gz hg38.tab.gz  
Bradfield JP (PLoS Genet 2011)
T1D
GDXHsS00001 hg18.tab hg19.tab hg38.tab hg18.tab.gz hg19.tab.gz hg38.tab.gz  
Anderson CA (Nat Genet 2011)
UC
GDXHsS00029 hg18.tab hg19.tab hg38.tab hg18.tab.gz hg19.tab.gz hg38.tab.gz  
Censin JC (PLoS Medicine 2017)
T1D
N/A Data Dryad N/A